Thursday, August 23, 2012

R and the web (for beginners), Part III: Scraping MPs' expenses in detail from the web

In this last post of my little series (see my latest post) on R and the web I explain how to extract data of a website (web scraping/screen scraping) with R. If the data you want to analyze are a part of a web page, for example a HTML-table (or hundreds of them) it might be very time-consuming (and boring!) to manually copy/paste all of its content or even typewrite it to a spreadsheet table or data frame. Instead, you can let R do the job for you!

This post is really aimed at beginners. Thus, to keep things simple it only deals with scraping one data table from one web page: a table published by BBC NEWS containing the full range of British Members of Parliament' expenses in 2007-2008. Quite an interesting data set if you are into political scandals...


Web scraping with R

There are several R packages that might be helpful for web scraping, such as XML, RCurl, and scrapeR. In this example only the XML package is used. As a fist step, you parse the whole HTML-file and extract all HTML-tables in it:

library(XML)

# URL of interest:
mps <- "http://news.bbc.co.uk/2/hi/uk_politics/8044207.stm" 

# parse the document for R representation:
mps.doc <- htmlParse(mps)

# get all the tables in mps.doc as data frames
mps.tabs <- readHTMLTable(mps.doc) 

mps.tabs is a list containing in each element a HTML-table from the parsed website (mps.doc) as data.frame. The website contains several HTML-tables (some are rather used to structure the website and not to present data). The list mps.tabs actually has seven entries, hence there were seven HTML-tables in the parsed document:

length(mps.tabs)

To proceed you need to check which of these data frames (list entries) contains the table you want (the MPs' expenses). You can do that "manually" by checking how the data frame starts and ends and compare it with the original table of the website:

head(mps.tabs[[1]])  #and
tail(mps.tabs[[1]])  #for 1 to 7

With only seven entries this is quite fast. But alternatively you could also write a little loop to do the job for you. The loop checks each data frame for certain conditions. In this case: the string of the first row and first column and the string in the last row and column. According to the original table from the website that should be:
first <- "Abbott, Ms Diane"
last <- "157,841"

# ... and the loop:

for (i in 1:length(mps.tabs)) {
 
  lastrow <- nrow(mps.tabs[[i]]) # get number of rows
  lastcol <- ncol(mps.tabs[[i]])
 
  if (as.character(mps.tabs[[i]][1,1])==first & as.character(mps.tabs[[i]][lastrow,lastcol])==last) {
   
    tabi <- i
     
    }
  }

Check if that is realy what you want and extract the relevant table as data frame.

head(mps.tabs[[tabi]])
tail(mps.tabs[[tabi]])
mps <- mps.tabs[[tabi]] 

Before you can properly analyze this data set we have to remove the commas in the columns with expenses and format them as numeric:

money <- sapply(mps[,-1:-3], FUN= function(x) as.numeric(gsub(",", "", as.character(x), fixed = TRUE) ))

mps2 <- cbind(mps[,1:3],money)

Now you are ready to go... For example, you could compare how the total expenses are distributed for each of the five biggest parties:

# which are the five biggest parties by # of mps?
nbig5 <- names(summary(mps2$Party)[order(summary(mps2$Party)*-1)][1:5])

#subset of mps only with the five biggest parties:
big5 <- subset(mps2, mps$Party%in%nbig5)

# load the lattice package for a nice plot

library(lattice)

bwplot(Total ~  Party, data=big5, ylab="Total expenses per MP (in £)")


Here is the resulting plot: 



 And the relevant R code in one piece:

library(XML)

# URL of interest:
mps <- "http://news.bbc.co.uk/2/hi/uk_politics/8044207.stm" 

# parse the document for R representation:
mps.doc <- htmlParse(mps)


# get all the tables in mps.doc as data frames
mps.tabs <- readHTMLTable(mps.doc)
# loop to find relevant table:

first <- "Abbott, Ms Diane"
last <- "157,841"

for (i in 1:length(mps.tabs)) {
 
  lastrow <- nrow(mps.tabs[[i]]) # get number of rows
  lastcol <- ncol(mps.tabs[[i]])
 
  if (as.character(mps.tabs[[i]][1,1])==first & as.character(mps.tabs[[i]][lastrow,lastcol])==last) {
   
    tabi <- i
     
    }
  }


# extract the relevant table and format it:

mps <- mps.tabs[[tabi]]  

money <- sapply(mps[,-1:-3], FUN= function(x) as.numeric(gsub(",", "", as.character(x), fixed = TRUE) ))

mps2 <- cbind(mps[,1:3],money)


# which are the five biggest parties by # of mps?
nbig5 <- names(summary(mps2$Party)[order(summary(mps2$Party)*-1)][1:5])

#subset of mps only with the five biggest parties:
big5 <- subset(mps2, mps$Party%in%nbig5)

# load the lattice package for a nice plot

library(lattice)

bwplot(Total ~  Party, data=big5, ylab="Total expenses per MP (in £)")

59 comments:

  1. Wonderful! Thanks so much!
    Sincerely,
    Erin

    ReplyDelete
  2. Hi Erin,
    Thanks a lot for the positive feedback!
    I'm glad you like it.
    best regards,
    gtd

    ReplyDelete
  3. Am in the process of creating an engine on the cloud that allows scraping of data from online listings that spans multiple pages with links to embedded pages.

    Go a demo deployed here
    http://ec2-204-236-207-28.compute-1.amazonaws.com/scrap-gm

    where I scraped price and image url from the main listing page, while getting description, seller_name, seller_profile_url from the corresponding embedded page.

    {
    origin_url: 'http://www.ebay.com/sch/?_nkw=GM%20Part&_pgn=1',
    columns: [
    {
    col_name: 'item_name',
    dom_query: 'h4 a'
    }, {
    col_name: 'item_detail_url',
    dom_query: 'h4 a',
    required_attribute: 'href',
    options : {
    columns: [{
    col_name: 'description',
    dom_query: '#desc_div'
    },{
    col_name: 'seller_name',
    dom_query: '.mbg a[[0]]'
    },{
    col_name: 'seller_profile_url',
    dom_query: '.mbg a[[0]]',
    required_attribute: 'href'
    }]
    }
    }, {
    col_name: 'item_image',
    dom_query: '.img img',
    required_attribute: 'src'
    }
    ],
    next_page: {
    dom_query: '.next'
    }
    };


    Would like to get your feedback to know if having it integrated into R would be useful?

    ReplyDelete
    Replies
    1. Hi,

      I am not exactly sure what you mean by "integrate into R". I think, the question you should ask yourself is who will use your application and for what (in order to answer your question above). However, here some of my thoughts about why writing a scraper in R (or interfacing it with R...):
      In terms of web scraping I use R to directly integrate the data gathering process to the statistical analysis (on the one hand for convenience on the other hand for reproducibility). Hence, (in a broader sense) I use R to write scrapers for scientific purposes.
      However, if your application is meant to retrieve data and directly reprocess it in a web environment, R might not be the best choice. In that case, I think, Perl would make more sense.

      Delete
    2. This comment has been removed by the author.

      Delete
  4. Hi,

    Great work buddy!
    But this works only if the site has tables in it, right?. What if I want to collect every text available on the website and then analyze it. How can I do that? Do you have codes for that. Reply awaited . Thanx in advance

    ReplyDelete
    Replies
    1. thanks! yes, this post is specifically on how to scrap tables. probably the simplest way to "collect every text available on a website" is to

      first: read in the whole html document as text/string

      second: remove all html tags (http://stackoverflow.com/questions/3765754/remove-html-tags-from-string-r-programming)

      third: use a text mining tool to further process/analyze the remaining text (such as the tm package: http://cran.r-project.org/web/packages/tm/index.html)

      note though, that this is rather a brute force approach. for more sophisticated analyses you might want to only extract certain text elements of a website. this might be a good starting point: http://www.stat.berkeley.edu/classes/s133/Readexample.html

      Delete
  5. Nice post. If I run your loop though I get an error. Any idea how to fix this? Thank you.
    Error in if (as.character(mps.tabs[[i]][1, 1]) == first & as.character(mps.tabs[[i]][lastrow, :
    argument is of length zero

    ReplyDelete
    Replies
    1. I encountered the same error in my environment:
      R version 3.1.1 (2014-07-10) -- "Sock it to Me"
      Copyright (C) 2014 The R Foundation for Statistical Computing
      Platform: x86_64-apple-darwin13.1.0 (64-bit)

      I modified the if condition as follows and it works for me:

      if (isTRUE(as.character(mps.tabs[[i]][lastrow,lastcol])==last.entry) & isTRUE(as.character(mps.tabs[[i]][1,1])==first.entry)) {
      tabi <- i
      }

      Delete
  6. Nice Post. But when I am running the code initially

    for (i in 1:length(mps.tabs)) {

    lastrow <- nrow(mps.tabs[[i]]) # get number of rows
    lastcol <- ncol(mps.tabs[[i]])

    if (isTRUE(as.character(mps.tabs[[i]][1,1])==first) & isTRUE(as.numeric(mps.tabs[[i]][lastrow,lastcol])==last)) {

    tabi <- i

    }
    }

    use to throw an that 'argument is of length zero'. After which I changed it to

    if (isTRUE(as.character(mps.tabs[[i]][lastrow,lastcol])==last.entry) & isTRUE(as.character(mps.tabs[[i]][1,1])==first.entry)) {
    tabi <- i
    }

    but still it says 'Error: object 'tabi' not found' any idea how to fix it.

    Thank you

    ReplyDelete
  7. i am also getting the same error as yasho joshi is getting ...Pls help

    ReplyDelete
  8. Hiii....I am really new to this field but the blog helps me to learn about scraping..Easily understandable to all...
    Thanks for updating these types of information...


    R Programming Training in Chennai | Software Testing Training in Chennai

    ReplyDelete
  9. Nice article...While running the code it having an error"object not found" ..How to rectify that error....

    ReplyDelete
  10. Nice blog and Information. Like to share some more web scrapping or crawling tools, One of my friend got service from Mobito and like to share with you guys for the details to know more Mobito - Web crawler tools

    ReplyDelete
  11. Appreciating the persistence you put into your blog and detailed information you provide.
    Blue Prism Training in Bangalore

    ReplyDelete
  12. This comment has been removed by the author.

    ReplyDelete
  13. Web Scraping is the process in which we extract data from different websites.

    ReplyDelete
  14. Hi, possibly i’m being a little off topic here, but I was browsing your site and it looks stimulating. I’m writing a blog and trying to make it look neat, but everytime I touch it I mess something up. Did you design the blog yourself?

    Digital Marketing Course in Chennai
    Digital Marketing Training in Chennai
    Online Digital Marketing Courses
    SEO Training in Chennai
    Digital Marketing Course
    Digital Marketing Training
    Digital Marketing Courses

    ReplyDelete
  15. I was recommended this web site by means of my cousin. I am now not certain whether this post is written through him as nobody else recognise such precise about my difficulty. You're amazing! Thank you!



    angularjs Training in online

    angularjs Training in bangalore

    angularjs Training in bangalore

    angularjs Training in btm

    ReplyDelete
  16. Very nice post here and thanks for it .I always like and such a super contents of these post.Excellent and very cool idea and great content of different kinds of the valuable information's.
    Good discussion. Thank you.
    Anexas
    Six Sigma Training in Abu Dhabi
    Six Sigma Training in Dammam
    Six Sigma Training in Riyadh

    ReplyDelete
  17. The post is written in very a good manner and it entails many useful information for me. I am happy to find your distinguished way of writing the post. Now you make it easy for me to understand and implement the concept.
    Python training in marathahalli | Python training institute in pune

    ReplyDelete
  18. Woah this blog is wonderful i like studying your posts. Keep up the great work! You understand, lots of persons are hunting around for this info, you could help them greatly.

    Java training in Chennai | Java training in Bangalore

    Java interview questions and answers | Core Java interview questions and answers

    ReplyDelete
  19. I really enjoy simply reading all of your weblogs. Simply wanted to inform you that you have people like me who appreciate your work. Definitely a great post I would like to read this
    Data Science Training in Indira nagar | Data Science Training in btmlayout

    Python Training in Kalyan nagar | Data Science training in Indira nagar

    Data Science Training in Marathahalli | Data Science Training in BTM Layout

    ReplyDelete
  20. i am for the first time here. I found this board and I in finding It truly helpful & it helped me out a lot. I hope to present something back and help others such as you helped me. We Stock both New and Refurbished

    ReplyDelete
  21. I always enjoy reading quality articles by an individual who is obviously knowledgeable on their chosen subject. Ill be watching this post with much interest. Keep up the great work, I will be back

    devops online training

    aws online training

    data science with python online training

    data science online training

    rpa online training

    ReplyDelete
  22. Thanks for the blog loaded with so many information. Stopping by your blog helped me to get what I was looking for.
    Webdesign

    ReplyDelete
  23. web development there are various platforms like azure. learn azure through azure training in hyderabad

    ReplyDelete
  24. I learned World's Trending Technology from certified experts for free of cost. I got a job in decent Top MNC Company with handsome 14 LPA salary, I have learned the World's Trending Technology from python training in btm layout

    experts who know advanced concepts which can help to solve any type of Real-time issues in the field of Python. Really worth trying Freelance SEO expert in Bangalore

    ReplyDelete
  25. Visit for AWS training in Bangalore:- AWS training in Bangalore

    ReplyDelete
  26. Thanks for sharing,very useful blog.I appreciate your work to provide clear and understandable content.Keep updating us more.
    Machine learning training institute in bangalore

    ReplyDelete
  27. Thanks for this blog are more informative contents step by step. I here attached my site would you see this blog.

    7 tips to start a career in digital marketing

    “Digital marketing is the marketing of product or service using digital technologies, mainly on the Internet, but also including mobile phones, display advertising, and any other digital medium”. This is the definition that you would get when you search for the term “Digital marketing” in google. Let’s give out a simpler explanation by saying, “the form of marketing, using the internet and technologies like phones, computer etc”.

    we have offered to the advanced syllabus course digital marketing for available

    more details click the link now.

    https://www.webdschool.com/digital-marketing-course-in-chennai.html

    ReplyDelete
  28. Thanks for this blog it is so informative blog and useful for us.
    https://www.acte.in/reviews-complaints-testimonials
    https://www.acte.in/velachery-reviews
    https://www.acte.in/tambaram-reviews
    https://www.acte.in/anna-nagar-reviews
    https://www.acte.in/porur-reviews
    https://www.acte.in/omr-reviews
    https://www.acte.in/blog/acte-student-reviews

    ReplyDelete
  29. I simply want to mention I am just all new to blogging and site-building and truly loved you’re web page. Almost certainly I’m planning to bookmark your site . You really have outstanding stories. Many thanks for revealing your webpage.…
    Azure Training in Chennai

    Azure Training in Bangalore

    Azure Training in Hyderabad

    Azure Training in Pune

    Azure Training | microsoft azure certification | Azure Online Training Course

    Azure Online Training

    ReplyDelete
  30. Really awesome blog!!! I finally found great post here.I really enjoyed reading this article. Nice article on data science . Thanks for sharing your innovative ideas to our vision. your writing style is simply awesome with useful information. Very informative, Excellent work! I will get back here.
    python training in bangalore

    python training in hyderabad

    python online training

    python training

    python flask training

    python flask online training

    python training in coimbatore
    python training in chennai

    python course in chennai

    python online training in chennai

    ReplyDelete
  31. Great post, I really interesting the way you highlighted some important points.I never seen these type of article in my life ..its really wonderful Thanks very much, I appreciate your post.
    Java Training in Chennai

    Java Training in Bangalore

    Java Training in Hyderabad

    Java Training
    Java Training in Coimbatore


    ReplyDelete
  32. It was so nice content.I was really satisfied by seeing this content.
    sap wm training in bangalore

    ReplyDelete
  33. Nice Blog information.
    GIEC Global is the Best Education Consultants in Melbourne, Australia and education consultant in Melbourne, Sydney, Brisbane, Perth, Adelaide,Australia.Education Consultants in Melbourne, Best Education Agent in Melbourne, Sydney, Adelaide, Perth, and Brisbane is GIEC Global. We are Melbourne Migration and Education Consultants, Education Migration Agent Melbourne, Melbourne Study Abroad, and Performance Education Melbourne

    ReplyDelete
  34. Infycle Technologies, the No.1 software training institute in Chennai offers the leading Python course in Chennai, for tech professionals and students at the best offers. In addition to the Python course, other in-demand courses such as Data Science, Selenium, Oracle, Java, Power BI, Digital Marketing also will be trained with 100% practical classes. After the completion of training, the trainees will be sent for placement interviews in the top MNC's. Call 7504633633 to get more info and a free demo.

    ReplyDelete
  35. Grab the best AWS Training in Chennaifrom Infycle Technologies, the best software training institute, and Placement centre in Chennai. We also provide technical courses like Power BI, Cyber Security, Graphic Design and Animation, Block Security, Java, Oracle, Python etc. For free demo class and enquiry call 7504633633.

    ReplyDelete
  36. That is in try of truth conceivable to tune in. much obliged to you for the supplant and invigorating karma. Microsoft Office 2007 Crack Free Download

    ReplyDelete
  37. DigiDNA iMazing is acquire an outside pressure as of organizer chief notwithstanding through it by the File App plan. Imazing Crack

    ReplyDelete

  38. I hope you're having a good day. At least once a week I come check out your blog to see what you've been up to.
    https://easyserialkeys.com/plagiarism-checker-x-crack/

    ReplyDelete